AMR++ Bioinformatic pipeline

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        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.15

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        AMR++ Bioinformatic pipeline
        A pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resistance genes, or resistome.

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Contact E-mail
        meglab.metagenomics@gmail.com
        Application Type
        AMR++
        Project Type
        FastQC analysis

        Report generated on 2024-04-09, 02:05 CDT based on data in:


        General Statistics

        Showing 758/758 rows and 4/6 columns.
        Sample Name% Dups% GCMedian Read LengthM Seqs
        ICASA-0104-RU_S217_L001_R1_001
        95.6%
        54%
        251 bp
        0.7
        ICASA-0104-RU_S217_L001_R2_001
        93.3%
        53%
        251 bp
        0.7
        ICASA-0109-Fec_S100_L001_R1_001
        96.2%
        54%
        251 bp
        0.6
        ICASA-0109-Fec_S100_L001_R2_001
        93.8%
        52%
        250 bp
        0.6
        ICASA-0109-LI_S146_L001_R1_001
        95.8%
        53%
        251 bp
        0.8
        ICASA-0109-LI_S146_L001_R2_001
        93.3%
        51%
        251 bp
        0.8
        ICASA-0109-SI_S312_L001_R1_001
        96.1%
        56%
        251 bp
        0.4
        ICASA-0109-SI_S312_L001_R2_001
        93.9%
        52%
        251 bp
        0.4
        ICASA-0110-Fec_S342_L001_R1_001
        96.3%
        55%
        251 bp
        0.8
        ICASA-0110-Fec_S342_L001_R2_001
        94.5%
        52%
        251 bp
        0.8
        ICASA-0112-Fec_S71_L001_R1_001
        95.3%
        54%
        251 bp
        0.7
        ICASA-0112-Fec_S71_L001_R2_001
        94.0%
        51%
        250 bp
        0.7
        ICASA-0113-Fec_S135_L001_R1_001
        96.5%
        54%
        251 bp
        1.0
        ICASA-0113-Fec_S135_L001_R2_001
        95.0%
        52%
        250 bp
        1.0
        ICASA-0114-Fec_S235_L001_R1_001
        96.6%
        54%
        251 bp
        0.8
        ICASA-0114-Fec_S235_L001_R2_001
        94.9%
        51%
        251 bp
        0.8
        ICASA-0117-Fec_S215_L001_R1_001
        96.0%
        55%
        251 bp
        0.6
        ICASA-0117-Fec_S215_L001_R2_001
        94.1%
        52%
        251 bp
        0.6
        ICASA-0118-Fec_S19_L001_R1_001
        97.0%
        54%
        251 bp
        0.8
        ICASA-0118-Fec_S19_L001_R2_001
        94.5%
        52%
        251 bp
        0.8
        ICASA-0124-RU_S159_L001_R1_001
        96.5%
        55%
        251 bp
        0.7
        ICASA-0124-RU_S159_L001_R2_001
        93.8%
        53%
        251 bp
        0.7
        ICASA-0125-LI_S187_L001_R1_001
        95.9%
        54%
        251 bp
        0.8
        ICASA-0125-LI_S187_L001_R2_001
        94.3%
        52%
        251 bp
        0.8
        ICASA-0125-SI_S175_L001_R1_001
        96.4%
        55%
        251 bp
        0.8
        ICASA-0125-SI_S175_L001_R2_001
        96.2%
        52%
        251 bp
        0.8
        ICASA-0127-Fec_S319_L001_R1_001
        96.2%
        54%
        251 bp
        0.6
        ICASA-0127-Fec_S319_L001_R2_001
        94.0%
        51%
        251 bp
        0.6
        ICASA-0129-Fec_S280_L001_R1_001
        95.5%
        53%
        251 bp
        0.6
        ICASA-0129-Fec_S280_L001_R2_001
        93.6%
        51%
        251 bp
        0.6
        ICASA-0132-LI_S94_L001_R1_001
        96.0%
        54%
        251 bp
        0.7
        ICASA-0132-LI_S94_L001_R2_001
        94.3%
        51%
        251 bp
        0.7
        ICASA-0132-RU_S79_L001_R1_001
        95.3%
        54%
        251 bp
        0.7
        ICASA-0132-RU_S79_L001_R2_001
        92.8%
        52%
        251 bp
        0.7
        ICASA-0132-SI_S352_L001_R1_001
        92.7%
        55%
        251 bp
        0.6
        ICASA-0132-SI_S352_L001_R2_001
        91.9%
        54%
        251 bp
        0.6
        ICASA-0136-LI_S329_L001_R1_001
        79.0%
        54%
        251 bp
        0.0
        ICASA-0136-LI_S329_L001_R2_001
        67.4%
        52%
        251 bp
        0.0
        ICASA-0136-RU_S86_L001_R1_001
        95.5%
        55%
        251 bp
        0.9
        ICASA-0136-RU_S86_L001_R2_001
        93.2%
        53%
        251 bp
        0.9
        ICASA-0136-SI_S297_L001_R1_001
        96.7%
        54%
        251 bp
        0.6
        ICASA-0136-SI_S297_L001_R2_001
        95.0%
        51%
        251 bp
        0.6
        ICASA-0137-Fec_S218_L001_R1_001
        96.2%
        54%
        251 bp
        0.6
        ICASA-0137-Fec_S218_L001_R2_001
        94.1%
        51%
        251 bp
        0.6
        ICASA-0139-Fec_S204_L001_R1_001
        96.3%
        55%
        251 bp
        0.8
        ICASA-0139-Fec_S204_L001_R2_001
        94.5%
        53%
        251 bp
        0.8
        ICASA-0140-Fec_S311_L001_R1_001
        96.2%
        54%
        251 bp
        0.7
        ICASA-0140-Fec_S311_L001_R2_001
        94.3%
        51%
        251 bp
        0.7
        ICASA-0142-Fec_S315_L001_R1_001
        96.0%
        54%
        251 bp
        0.6
        ICASA-0142-Fec_S315_L001_R2_001
        93.9%
        52%
        251 bp
        0.6
        ICASA-0149-Fec_S40_L001_R1_001
        96.8%
        54%
        251 bp
        0.8
        ICASA-0149-Fec_S40_L001_R2_001
        95.1%
        52%
        251 bp
        0.8
        ICASA-0151-RU_S298_L001_R1_001
        95.9%
        55%
        251 bp
        0.7
        ICASA-0151-RU_S298_L001_R2_001
        92.9%
        53%
        251 bp
        0.7
        ICASA-0151-SI_S249_L001_R1_001
        96.5%
        55%
        251 bp
        0.5
        ICASA-0151-SI_S249_L001_R2_001
        94.1%
        51%
        251 bp
        0.5
        ICASA-0154-Fec_S85_L001_R1_001
        94.1%
        55%
        251 bp
        0.5
        ICASA-0154-Fec_S85_L001_R2_001
        94.8%
        52%
        251 bp
        0.5
        ICASA-0154-LI_S210_L001_R1_001
        94.4%
        54%
        251 bp
        0.6
        ICASA-0154-LI_S210_L001_R2_001
        92.9%
        52%
        251 bp
        0.6
        ICASA-0154-RU_S96_L001_R1_001
        96.0%
        55%
        251 bp
        0.6
        ICASA-0154-RU_S96_L001_R2_001
        92.1%
        54%
        251 bp
        0.6
        ICASA-0154-SI_S129_L001_R1_001
        95.9%
        56%
        251 bp
        0.8
        ICASA-0154-SI_S129_L001_R2_001
        93.5%
        54%
        251 bp
        0.8
        ICASA-0155-Fec_S26_L001_R1_001
        96.3%
        54%
        251 bp
        0.7
        ICASA-0155-Fec_S26_L001_R2_001
        93.2%
        52%
        251 bp
        0.7
        ICASA-0158-Fec_S9_L001_R1_001
        95.6%
        54%
        251 bp
        0.6
        ICASA-0158-Fec_S9_L001_R2_001
        93.2%
        52%
        251 bp
        0.6
        ICASA-0160-Fec_S221_L001_R1_001
        95.3%
        54%
        251 bp
        0.6
        ICASA-0160-Fec_S221_L001_R2_001
        94.0%
        52%
        251 bp
        0.6
        ICASA-0161-Fec_S195_L001_R1_001
        96.5%
        55%
        251 bp
        0.7
        ICASA-0161-Fec_S195_L001_R2_001
        94.6%
        52%
        250 bp
        0.7
        ICASA-0163-Fec_S118_L001_R1_001
        96.1%
        55%
        251 bp
        0.7
        ICASA-0163-Fec_S118_L001_R2_001
        95.1%
        53%
        251 bp
        0.7
        ICASA-0163-LI_S166_L001_R1_001
        95.9%
        54%
        251 bp
        0.9
        ICASA-0163-LI_S166_L001_R2_001
        94.8%
        52%
        251 bp
        0.9
        ICASA-0163-SI_S15_L001_R1_001
        95.7%
        56%
        251 bp
        0.7
        ICASA-0163-SI_S15_L001_R2_001
        95.4%
        54%
        251 bp
        0.7
        ICASA-0164-Fec_S34_L001_R1_001
        96.8%
        54%
        251 bp
        0.9
        ICASA-0164-Fec_S34_L001_R2_001
        94.9%
        52%
        251 bp
        0.9
        ICASA-0168-Fec_S172_L001_R1_001
        95.0%
        54%
        251 bp
        0.7
        ICASA-0168-Fec_S172_L001_R2_001
        94.7%
        52%
        251 bp
        0.7
        ICASA-0171-Fec_S185_L001_R1_001
        96.4%
        54%
        251 bp
        0.7
        ICASA-0171-Fec_S185_L001_R2_001
        94.6%
        52%
        251 bp
        0.7
        ICASA-0172-Fec_S208_L001_R1_001
        95.3%
        54%
        251 bp
        0.6
        ICASA-0172-Fec_S208_L001_R2_001
        95.1%
        52%
        251 bp
        0.6
        ICASA-0180-Fec_S314_L001_R1_001
        96.5%
        55%
        251 bp
        0.7
        ICASA-0180-Fec_S314_L001_R2_001
        94.8%
        53%
        251 bp
        0.7
        ICASA-0181-Fec_S161_L001_R1_001
        96.4%
        54%
        251 bp
        1.1
        ICASA-0181-Fec_S161_L001_R2_001
        95.3%
        51%
        251 bp
        1.1
        ICASA-0189-Fec_S349_L001_R1_001
        97.1%
        55%
        251 bp
        0.9
        ICASA-0189-Fec_S349_L001_R2_001
        95.3%
        52%
        251 bp
        0.9
        ICASA-0193-Fec_S177_L001_R1_001
        96.8%
        55%
        251 bp
        0.8
        ICASA-0193-Fec_S177_L001_R2_001
        95.0%
        52%
        251 bp
        0.8
        ICASA-0194-Fec_S30_L001_R1_001
        96.3%
        54%
        251 bp
        0.8
        ICASA-0194-Fec_S30_L001_R2_001
        95.0%
        51%
        251 bp
        0.8
        ICASA-0202-Fec_S202_L001_R1_001
        96.6%
        54%
        251 bp
        0.7
        ICASA-0202-Fec_S202_L001_R2_001
        95.2%
        51%
        251 bp
        0.7
        ICASA-0208-Fec_S176_L001_R1_001
        95.9%
        55%
        251 bp
        0.9
        ICASA-0208-Fec_S176_L001_R2_001
        94.9%
        53%
        251 bp
        0.9
        ICASA-0209-Fec_S149_L001_R1_001
        96.1%
        54%
        251 bp
        0.7
        ICASA-0209-Fec_S149_L001_R2_001
        94.9%
        52%
        251 bp
        0.7
        ICASA-0211-Fec_S222_L001_R1_001
        96.8%
        54%
        251 bp
        0.8
        ICASA-0211-Fec_S222_L001_R2_001
        94.9%
        52%
        251 bp
        0.8
        ICASA-0213-Fec_S292_L001_R1_001
        95.9%
        54%
        251 bp
        0.7
        ICASA-0213-Fec_S292_L001_R2_001
        93.7%
        51%
        251 bp
        0.7
        ICASA-0213-RU_S156_L001_R1_001
        95.9%
        55%
        251 bp
        0.7
        ICASA-0213-RU_S156_L001_R2_001
        93.6%
        53%
        251 bp
        0.7
        ICASA-0216-Fec_S309_L001_R1_001
        95.4%
        54%
        251 bp
        0.7
        ICASA-0216-Fec_S309_L001_R2_001
        94.3%
        52%
        251 bp
        0.7
        ICASA-6392-Fec_S151_L001_R1_001
        96.5%
        54%
        251 bp
        0.8
        ICASA-6392-Fec_S151_L001_R2_001
        94.6%
        51%
        251 bp
        0.8
        ICASA-6394-LI_S165_L001_R1_001
        95.8%
        53%
        251 bp
        0.9
        ICASA-6394-LI_S165_L001_R2_001
        93.9%
        51%
        251 bp
        0.9
        ICASA-6394-SI_S350_L001_R1_001
        97.1%
        56%
        251 bp
        1.0
        ICASA-6394-SI_S350_L001_R2_001
        95.2%
        55%
        251 bp
        1.0
        ICASA-6395-LI_S120_L001_R1_001
        94.9%
        54%
        251 bp
        0.6
        ICASA-6395-LI_S120_L001_R2_001
        94.2%
        52%
        251 bp
        0.6
        ICASA-6396-LI_S216_L001_R1_001
        96.3%
        54%
        251 bp
        0.8
        ICASA-6396-LI_S216_L001_R2_001
        94.2%
        51%
        251 bp
        0.8
        ICASA-6396-RU_S56_L001_R1_001
        96.2%
        55%
        251 bp
        0.6
        ICASA-6396-RU_S56_L001_R2_001
        93.3%
        54%
        251 bp
        0.6
        ICASA-6397-Fec_S95_L001_R1_001
        96.4%
        54%
        251 bp
        0.6
        ICASA-6397-Fec_S95_L001_R2_001
        94.1%
        52%
        250 bp
        0.6
        ICASA-6402-LI_S194_L001_R1_001
        95.5%
        54%
        251 bp
        0.7
        ICASA-6402-LI_S194_L001_R2_001
        94.2%
        51%
        251 bp
        0.7
        ICASA-6402-RU_S257_L001_R1_001
        95.7%
        54%
        251 bp
        0.6
        ICASA-6402-RU_S257_L001_R2_001
        93.7%
        53%
        251 bp
        0.6
        ICASA-6403-Fec_S124_L001_R1_001
        96.2%
        54%
        251 bp
        0.8
        ICASA-6403-Fec_S124_L001_R2_001
        94.1%
        51%
        250 bp
        0.8
        ICASA-6404-Fec_S241_L001_R1_001
        95.1%
        54%
        251 bp
        0.7
        ICASA-6404-Fec_S241_L001_R2_001
        94.9%
        51%
        251 bp
        0.7
        ICASA-6405-Fec_S308_L001_R1_001
        96.0%
        54%
        251 bp
        0.7
        ICASA-6405-Fec_S308_L001_R2_001
        93.8%
        51%
        251 bp
        0.7
        ICASA-6410-Fec_S102_L001_R1_001
        93.6%
        54%
        251 bp
        0.6
        ICASA-6410-Fec_S102_L001_R2_001
        94.0%
        51%
        251 bp
        0.6
        ICASA-6413-Fec_S147_L001_R1_001
        97.1%
        55%
        251 bp
        0.9
        ICASA-6413-Fec_S147_L001_R2_001
        95.1%
        53%
        251 bp
        0.9
        ICASA-6414-SI_S340_L001_R1_001
        95.6%
        56%
        251 bp
        0.5
        ICASA-6414-SI_S340_L001_R2_001
        93.4%
        55%
        251 bp
        0.5
        ICASA-6418-Fec_S5_L001_R1_001
        96.5%
        55%
        251 bp
        0.7
        ICASA-6418-Fec_S5_L001_R2_001
        95.0%
        53%
        251 bp
        0.7
        ICASA-6418-LI_S307_L001_R1_001
        96.6%
        57%
        251 bp
        0.6
        ICASA-6418-LI_S307_L001_R2_001
        94.3%
        56%
        251 bp
        0.6
        ICASA-6418-SI_S89_L001_R1_001
        92.6%
        54%
        251 bp
        0.6
        ICASA-6418-SI_S89_L001_R2_001
        89.4%
        52%
        251 bp
        0.6
        ICASA-6421-Fec_S44_L001_R1_001
        96.8%
        54%
        251 bp
        0.7
        ICASA-6421-Fec_S44_L001_R2_001
        94.9%
        52%
        251 bp
        0.7
        ICASA-6422-Fec_S256_L001_R1_001
        94.6%
        54%
        251 bp
        0.7
        ICASA-6422-Fec_S256_L001_R2_001
        94.2%
        52%
        251 bp
        0.7
        ICASA-6423-SI_S268_L001_R1_001
        94.4%
        55%
        251 bp
        0.3
        ICASA-6423-SI_S268_L001_R2_001
        94.2%
        54%
        251 bp
        0.3
        ICASA-6426-Fec_S254_L001_R1_001
        93.7%
        54%
        251 bp
        0.4
        ICASA-6426-Fec_S254_L001_R2_001
        94.1%
        51%
        251 bp
        0.4
        ICASA-6429-Fec_S60_L001_R1_001
        95.1%
        56%
        251 bp
        0.6
        ICASA-6429-Fec_S60_L001_R2_001
        94.6%
        53%
        250 bp
        0.6
        ICASA-6431-Fec_S321_L001_R1_001
        96.8%
        54%
        251 bp
        0.8
        ICASA-6431-Fec_S321_L001_R2_001
        95.2%
        51%
        251 bp
        0.8
        ICASA-6431-RU_S33_L001_R1_001
        97.0%
        55%
        251 bp
        0.8
        ICASA-6431-RU_S33_L001_R2_001
        94.3%
        54%
        251 bp
        0.8
        ICASA-6432-Fec_S273_L001_R1_001
        96.5%
        55%
        251 bp
        0.7
        ICASA-6432-Fec_S273_L001_R2_001
        94.6%
        52%
        251 bp
        0.7
        ICASA-6440-Fec_S84_L001_R1_001
        95.9%
        54%
        251 bp
        0.6
        ICASA-6440-Fec_S84_L001_R2_001
        94.6%
        52%
        250 bp
        0.6
        ICASA-6441-Fec_S267_L001_R1_001
        96.0%
        53%
        251 bp
        0.8
        ICASA-6441-Fec_S267_L001_R2_001
        93.8%
        52%
        251 bp
        0.8
        ICASA-6503-Fec_S29_L001_R1_001
        96.1%
        54%
        251 bp
        0.8
        ICASA-6503-Fec_S29_L001_R2_001
        94.7%
        51%
        251 bp
        0.8
        ICASA-6511-RU_S246_L001_R1_001
        94.0%
        54%
        251 bp
        0.4
        ICASA-6511-RU_S246_L001_R2_001
        92.3%
        53%
        251 bp
        0.4
        ICASA-6512-Fec_S154_L001_R1_001
        96.9%
        54%
        251 bp
        0.8
        ICASA-6512-Fec_S154_L001_R2_001
        95.1%
        51%
        251 bp
        0.8
        ICASA-6513-Fec_S247_L001_R1_001
        94.8%
        54%
        251 bp
        0.4
        ICASA-6513-Fec_S247_L001_R2_001
        93.6%
        52%
        251 bp
        0.4
        ICASA-6514-Fec_S188_L001_R1_001
        95.3%
        54%
        251 bp
        0.6
        ICASA-6514-Fec_S188_L001_R2_001
        95.1%
        52%
        251 bp
        0.6
        ICASA-6515-Fec_S347_L001_R1_001
        93.9%
        54%
        251 bp
        0.7
        ICASA-6515-Fec_S347_L001_R2_001
        94.5%
        52%
        251 bp
        0.7
        ICASA-6518-LI_S353_L001_R1_001
        95.3%
        54%
        251 bp
        0.7
        ICASA-6518-LI_S353_L001_R2_001
        92.9%
        51%
        251 bp
        0.7
        ICASA-6518-SI_S214_L001_R1_001
        96.6%
        55%
        251 bp
        0.6
        ICASA-6518-SI_S214_L001_R2_001
        95.1%
        51%
        251 bp
        0.6
        ICASA-6519-Fec_S317_L001_R1_001
        96.0%
        54%
        251 bp
        0.8
        ICASA-6519-Fec_S317_L001_R2_001
        94.9%
        52%
        251 bp
        0.8
        ICASA-6519-LI_S123_L001_R1_001
        95.0%
        54%
        251 bp
        0.8
        ICASA-6519-LI_S123_L001_R2_001
        93.5%
        51%
        251 bp
        0.8
        ICASA-6523-Fec_S196_L001_R1_001
        96.7%
        54%
        251 bp
        0.8
        ICASA-6523-Fec_S196_L001_R2_001
        94.4%
        52%
        251 bp
        0.8
        ICASA-6525-LI_S282_L001_R1_001
        95.0%
        54%
        251 bp
        0.5
        ICASA-6525-LI_S282_L001_R2_001
        93.1%
        51%
        251 bp
        0.5
        ICASA-6525-RU_S139_L001_R1_001
        95.0%
        54%
        251 bp
        0.9
        ICASA-6525-RU_S139_L001_R2_001
        92.6%
        52%
        251 bp
        0.9
        ICASA-6533-Fec_S39_L001_R1_001
        96.5%
        54%
        251 bp
        0.8
        ICASA-6533-Fec_S39_L001_R2_001
        94.4%
        51%
        250 bp
        0.8
        ICASA-6535-Fec_S164_L001_R1_001
        96.1%
        55%
        251 bp
        1.0
        ICASA-6535-Fec_S164_L001_R2_001
        95.5%
        52%
        251 bp
        1.0
        ICASA-6537-Fec_S322_L001_R1_001
        96.2%
        54%
        251 bp
        0.6
        ICASA-6537-Fec_S322_L001_R2_001
        94.0%
        51%
        251 bp
        0.6
        ICASA-6538-Fec_S108_L001_R1_001
        92.8%
        54%
        251 bp
        0.4
        ICASA-6538-Fec_S108_L001_R2_001
        94.0%
        52%
        250 bp
        0.4
        ICASA-6539-Fec_S294_L001_R1_001
        95.3%
        55%
        251 bp
        0.5
        ICASA-6539-Fec_S294_L001_R2_001
        94.6%
        53%
        251 bp
        0.5
        ICASA-6540-Fec_S225_L001_R1_001
        95.0%
        54%
        251 bp
        0.5
        ICASA-6540-Fec_S225_L001_R2_001
        94.7%
        52%
        251 bp
        0.5
        ICASA-6540-LI_S110_L001_R1_001
        96.4%
        53%
        251 bp
        0.8
        ICASA-6540-LI_S110_L001_R2_001
        94.5%
        52%
        251 bp
        0.8
        ICASA-6541-Fec_S191_L001_R1_001
        96.7%
        54%
        251 bp
        0.8
        ICASA-6541-Fec_S191_L001_R2_001
        94.6%
        52%
        251 bp
        0.8
        ICASA-6543-LI_S351_L001_R1_001
        95.8%
        53%
        251 bp
        0.8
        ICASA-6543-LI_S351_L001_R2_001
        93.5%
        51%
        251 bp
        0.8
        ICASA-6544-Fec_S54_L001_R1_001
        95.7%
        54%
        251 bp
        0.6
        ICASA-6544-Fec_S54_L001_R2_001
        94.3%
        52%
        251 bp
        0.6
        ICASA-6544-RU_S10_L001_R1_001
        95.0%
        54%
        251 bp
        0.7
        ICASA-6544-RU_S10_L001_R2_001
        93.1%
        53%
        251 bp
        0.7
        ICASA-6546-Fec_S78_L001_R1_001
        96.0%
        54%
        251 bp
        0.7
        ICASA-6546-Fec_S78_L001_R2_001
        93.9%
        51%
        250 bp
        0.7
        ICASA-6546-LI_S274_L001_R1_001
        95.6%
        54%
        251 bp
        0.7
        ICASA-6546-LI_S274_L001_R2_001
        93.2%
        52%
        251 bp
        0.7
        ICASA-6546-RU_S157_L001_R1_001
        95.2%
        55%
        251 bp
        0.7
        ICASA-6546-RU_S157_L001_R2_001
        93.0%
        53%
        251 bp
        0.7
        ICASA-6546-SI_S290_L001_R1_001
        94.9%
        55%
        251 bp
        0.6
        ICASA-6546-SI_S290_L001_R2_001
        92.7%
        53%
        251 bp
        0.6
        ICASA-6550-Fec_S72_L001_R1_001
        96.5%
        54%
        251 bp
        0.7
        ICASA-6550-Fec_S72_L001_R2_001
        94.4%
        51%
        251 bp
        0.7
        ICASA-6551-Fec_S174_L001_R1_001
        95.7%
        54%
        251 bp
        0.9
        ICASA-6551-Fec_S174_L001_R2_001
        93.8%
        51%
        251 bp
        0.9
        ICASA-6555-LI_S345_L001_R1_001
        95.8%
        54%
        251 bp
        0.7
        ICASA-6555-LI_S345_L001_R2_001
        93.7%
        51%
        251 bp
        0.7
        ICASA-6555-RU_S224_L001_R1_001
        96.0%
        54%
        251 bp
        0.8
        ICASA-6555-RU_S224_L001_R2_001
        93.1%
        53%
        251 bp
        0.8
        ICASA-6555-SI_S304_L001_R1_001
        83.7%
        55%
        251 bp
        0.0
        ICASA-6555-SI_S304_L001_R2_001
        77.6%
        52%
        251 bp
        0.0
        ICASA-6559-RU_S242_L001_R1_001
        95.5%
        55%
        251 bp
        0.5
        ICASA-6559-RU_S242_L001_R2_001
        92.5%
        53%
        251 bp
        0.5
        ICASA-6561-LI_S328_L001_R1_001
        11.1%
        56%
        251 bp
        0.0
        ICASA-6561-LI_S328_L001_R2_001
        0.0%
        55%
        251 bp
        0.0
        ICASA-6561-RU_S285_L001_R1_001
        95.2%
        55%
        251 bp
        0.4
        ICASA-6561-RU_S285_L001_R2_001
        92.5%
        54%
        251 bp
        0.4
        ICASA-6561-SI_S90_L001_R1_001
        96.1%
        56%
        251 bp
        0.7
        ICASA-6561-SI_S90_L001_R2_001
        95.0%
        53%
        251 bp
        0.7
        ICASA-6565-Fec_S58_L001_R1_001
        96.9%
        54%
        251 bp
        0.8
        ICASA-6565-Fec_S58_L001_R2_001
        94.8%
        52%
        251 bp
        0.8
        ICASA-6568-Fec_S325_L001_R1_001
        95.9%
        54%
        251 bp
        0.7
        ICASA-6568-Fec_S325_L001_R2_001
        94.1%
        52%
        250 bp
        0.7
        ICASA-6573-Fec_S150_L001_R1_001
        96.7%
        54%
        251 bp
        0.8
        ICASA-6573-Fec_S150_L001_R2_001
        94.8%
        52%
        251 bp
        0.8
        ICASA-6577-Fec_S277_L001_R1_001
        96.2%
        54%
        251 bp
        0.5
        ICASA-6577-Fec_S277_L001_R2_001
        93.7%
        52%
        251 bp
        0.5
        ICASA-6578-Fec_S269_L001_R1_001
        96.0%
        55%
        251 bp
        0.6
        ICASA-6578-Fec_S269_L001_R2_001
        94.1%
        52%
        251 bp
        0.6
        ICASA-6580-LI_S47_L001_R1_001
        96.4%
        54%
        251 bp
        0.8
        ICASA-6580-LI_S47_L001_R2_001
        94.1%
        52%
        251 bp
        0.8
        ICASA-6580-RU_S87_L001_R1_001
        96.2%
        54%
        251 bp
        0.7
        ICASA-6580-RU_S87_L001_R2_001
        93.3%
        52%
        251 bp
        0.7
        ICASA-6580-SI_S251_L001_R1_001
        95.6%
        55%
        251 bp
        0.3
        ICASA-6580-SI_S251_L001_R2_001
        93.0%
        53%
        251 bp
        0.3
        ICASA-6582-Fec_S91_L001_R1_001
        96.3%
        54%
        251 bp
        0.7
        ICASA-6582-Fec_S91_L001_R2_001
        94.6%
        52%
        250 bp
        0.7
        ICASA-6593-LI_S245_L001_R1_001
        95.5%
        54%
        251 bp
        0.7
        ICASA-6593-LI_S245_L001_R2_001
        93.7%
        52%
        251 bp
        0.7
        ICASA-6593-RU_S281_L001_R1_001
        95.2%
        55%
        251 bp
        0.4
        ICASA-6593-RU_S281_L001_R2_001
        91.5%
        53%
        251 bp
        0.4
        ICASA-6593-SI_S186_L001_R1_001
        96.8%
        56%
        251 bp
        0.8
        ICASA-6593-SI_S186_L001_R2_001
        95.1%
        55%
        251 bp
        0.8
        ICASA-6599-Fec_S219_L001_R1_001
        96.2%
        54%
        251 bp
        0.7
        ICASA-6599-Fec_S219_L001_R2_001
        94.2%
        51%
        251 bp
        0.7
        ICASA-6599-RU_S101_L001_R1_001
        95.9%
        54%
        251 bp
        0.7
        ICASA-6599-RU_S101_L001_R2_001
        93.3%
        54%
        251 bp
        0.7
        ICASA-6600-Fec_S182_L001_R1_001
        96.3%
        54%
        251 bp
        1.1
        ICASA-6600-Fec_S182_L001_R2_001
        94.6%
        52%
        251 bp
        1.1
        ICASA-6600-LI_S73_L001_R1_001
        95.6%
        53%
        251 bp
        0.8
        ICASA-6600-LI_S73_L001_R2_001
        93.5%
        52%
        251 bp
        0.8
        ICASA-6605-Fec_S236_L001_R1_001
        94.9%
        55%
        251 bp
        0.6
        ICASA-6605-Fec_S236_L001_R2_001
        95.1%
        53%
        250 bp
        0.6
        ICASA-6611-Fec_S252_L001_R1_001
        95.9%
        55%
        251 bp
        0.4
        ICASA-6611-Fec_S252_L001_R2_001
        93.5%
        52%
        251 bp
        0.4
        ICASA-6612-Fec_S37_L001_R1_001
        94.4%
        54%
        251 bp
        0.6
        ICASA-6612-Fec_S37_L001_R2_001
        94.1%
        52%
        251 bp
        0.6
        ICASA-6618-Fec_S43_L001_R1_001
        97.0%
        55%
        251 bp
        0.9
        ICASA-6618-Fec_S43_L001_R2_001
        94.0%
        52%
        251 bp
        0.9
        ICASA-6620-RU_S136_L001_R1_001
        96.2%
        54%
        251 bp
        0.7
        ICASA-6620-RU_S136_L001_R2_001
        94.2%
        53%
        251 bp
        0.7
        ICASA-6622-Fec_S240_L001_R1_001
        94.8%
        54%
        251 bp
        0.6
        ICASA-6622-Fec_S240_L001_R2_001
        94.5%
        52%
        251 bp
        0.6
        ICASA-6622-RU_S248_L001_R1_001
        95.1%
        54%
        251 bp
        0.4
        ICASA-6622-RU_S248_L001_R2_001
        91.8%
        53%
        251 bp
        0.4
        ICASA-6625-Fec_S205_L001_R1_001
        95.6%
        55%
        251 bp
        0.7
        ICASA-6625-Fec_S205_L001_R2_001
        94.9%
        52%
        251 bp
        0.7
        ICASA-6625-RU_S341_L001_R1_001
        95.1%
        54%
        251 bp
        0.7
        ICASA-6625-RU_S341_L001_R2_001
        94.9%
        53%
        251 bp
        0.7
        ICASA-6631-Fec_S97_L001_R1_001
        96.7%
        55%
        251 bp
        0.9
        ICASA-6631-Fec_S97_L001_R2_001
        94.8%
        53%
        250 bp
        0.9
        ICASA-6635-Fec_S303_L001_R1_001
        95.2%
        55%
        251 bp
        0.6
        ICASA-6635-Fec_S303_L001_R2_001
        94.3%
        52%
        251 bp
        0.6
        ICASA-6637-Fec_S111_L001_R1_001
        96.1%
        54%
        251 bp
        0.7
        ICASA-6637-Fec_S111_L001_R2_001
        94.1%
        52%
        251 bp
        0.7
        ICASA-6638-Fec_S57_L001_R1_001
        97.1%
        54%
        251 bp
        0.7
        ICASA-6638-Fec_S57_L001_R2_001
        95.1%
        51%
        251 bp
        0.7
        ICASA-6638-SI_S3_L001_R1_001
        95.0%
        57%
        251 bp
        0.5
        ICASA-6638-SI_S3_L001_R2_001
        94.4%
        56%
        251 bp
        0.5
        ICASA-6645-RU_S336_L001_R1_001
        95.1%
        55%
        251 bp
        0.4
        ICASA-6645-RU_S336_L001_R2_001
        93.6%
        53%
        251 bp
        0.4
        ICASA-6647-Fec_S310_L001_R1_001
        95.3%
        54%
        251 bp
        0.6
        ICASA-6647-Fec_S310_L001_R2_001
        93.5%
        52%
        251 bp
        0.6
        ICASA-6651-Fec_S8_L001_R1_001
        96.7%
        54%
        251 bp
        0.8
        ICASA-6651-Fec_S8_L001_R2_001
        94.7%
        52%
        250 bp
        0.8
        ICASA-6653-Fec_S199_L001_R1_001
        95.9%
        54%
        251 bp
        0.8
        ICASA-6653-Fec_S199_L001_R2_001
        94.1%
        52%
        251 bp
        0.8
        ICASA-6655-Fec_S144_L001_R1_001
        95.7%
        53%
        251 bp
        0.8
        ICASA-6655-Fec_S144_L001_R2_001
        93.7%
        51%
        251 bp
        0.8
        ICASA-6661-Fec_S1_L001_R1_001
        96.9%
        54%
        251 bp
        0.9
        ICASA-6661-Fec_S1_L001_R2_001
        95.2%
        52%
        251 bp
        0.9
        ICASA-6663-Fec_S81_L001_R1_001
        96.4%
        54%
        251 bp
        0.6
        ICASA-6663-Fec_S81_L001_R2_001
        94.4%
        52%
        251 bp
        0.6
        ICASA-6668-LI_S296_L001_R1_001
        96.0%
        54%
        251 bp
        0.6
        ICASA-6668-LI_S296_L001_R2_001
        93.7%
        51%
        251 bp
        0.6
        ICASA-6668-SI_S80_L001_R1_001
        94.9%
        56%
        251 bp
        0.8
        ICASA-6668-SI_S80_L001_R2_001
        95.4%
        54%
        251 bp
        0.8
        ICASA-6669-LI_S20_L001_R1_001
        95.8%
        53%
        251 bp
        0.8
        ICASA-6669-LI_S20_L001_R2_001
        94.3%
        51%
        251 bp
        0.8
        ICASA-6669-RU_S323_L001_R1_001
        94.4%
        54%
        251 bp
        0.5
        ICASA-6669-RU_S323_L001_R2_001
        91.6%
        53%
        251 bp
        0.5
        ICASA-6669-SI_S355_L001_R1_001
        96.9%
        57%
        251 bp
        0.9
        ICASA-6669-SI_S355_L001_R2_001
        95.2%
        56%
        251 bp
        0.9
        ICASA-6670-Fec_S82_L001_R1_001
        96.6%
        54%
        251 bp
        0.8
        ICASA-6670-Fec_S82_L001_R2_001
        94.8%
        51%
        251 bp
        0.8
        ICASA-6674-Fec_S193_L001_R1_001
        96.1%
        54%
        251 bp
        0.8
        ICASA-6674-Fec_S193_L001_R2_001
        94.6%
        51%
        251 bp
        0.8
        ICASA-6678-Fec_S74_L001_R1_001
        96.3%
        55%
        251 bp
        0.7
        ICASA-6678-Fec_S74_L001_R2_001
        94.4%
        52%
        251 bp
        0.7
        ICASA-6678-RU_S32_L001_R1_001
        95.6%
        55%
        251 bp
        0.7
        ICASA-6678-RU_S32_L001_R2_001
        93.6%
        54%
        250 bp
        0.7
        ICASA-6678-SI_S327_L001_R1_001
        96.5%
        56%
        251 bp
        0.7
        ICASA-6678-SI_S327_L001_R2_001
        95.4%
        55%
        251 bp
        0.7
        ICASA-6679-Fec_S229_L001_R1_001
        96.3%
        54%
        251 bp
        0.7
        ICASA-6679-Fec_S229_L001_R2_001
        94.3%
        52%
        251 bp
        0.7
        ICASA-6680-LI_S270_L001_R1_001
        94.3%
        54%
        251 bp
        0.7
        ICASA-6680-LI_S270_L001_R2_001
        93.0%
        52%
        251 bp
        0.7
        ICASA-6681-Fec_S35_L001_R1_001
        96.6%
        54%
        251 bp
        0.8
        ICASA-6681-Fec_S35_L001_R2_001
        94.2%
        52%
        250 bp
        0.8
        ICASA-6682-Fec_S65_L001_R1_001
        96.8%
        54%
        251 bp
        0.9
        ICASA-6682-Fec_S65_L001_R2_001
        94.8%
        51%
        251 bp
        0.9
        ICASA-6683-Fec_S354_L001_R1_001
        96.6%
        54%
        251 bp
        0.8
        ICASA-6683-Fec_S354_L001_R2_001
        95.2%
        51%
        251 bp
        0.8
        ICASA-6684-Fec_S59_L001_R1_001
        96.1%
        54%
        251 bp
        0.8
        ICASA-6684-Fec_S59_L001_R2_001
        93.6%
        51%
        250 bp
        0.8
        ICASA-6686-Fec_S14_L001_R1_001
        96.8%
        54%
        251 bp
        0.8
        ICASA-6686-Fec_S14_L001_R2_001
        94.5%
        52%
        251 bp
        0.8
        ICASA-6697-Fec_S93_L001_R1_001
        94.7%
        54%
        251 bp
        0.7
        ICASA-6697-Fec_S93_L001_R2_001
        94.4%
        52%
        250 bp
        0.7
        ICASA-6699-Fec_S262_L001_R1_001
        95.0%
        54%
        251 bp
        0.6
        ICASA-6699-Fec_S262_L001_R2_001
        94.3%
        51%
        251 bp
        0.6
        ICASA-6700-Fec_S234_L001_R1_001
        96.5%
        55%
        251 bp
        0.7
        ICASA-6700-Fec_S234_L001_R2_001
        94.4%
        52%
        251 bp
        0.7
        ICASA-6701-Fec_S233_L001_R1_001
        96.4%
        54%
        251 bp
        1.0
        ICASA-6701-Fec_S233_L001_R2_001
        94.7%
        51%
        251 bp
        1.0
        ICASA-6707-Fec_S140_L001_R1_001
        96.5%
        54%
        251 bp
        0.8
        ICASA-6707-Fec_S140_L001_R2_001
        94.6%
        51%
        251 bp
        0.8
        ICASA-6708-Fec_S348_L001_R1_001
        95.9%
        54%
        251 bp
        0.8
        ICASA-6708-Fec_S348_L001_R2_001
        94.3%
        51%
        250 bp
        0.8
        ICASA-6709-Fec_S62_L001_R1_001
        96.7%
        55%
        251 bp
        0.7
        ICASA-6709-Fec_S62_L001_R2_001
        94.6%
        52%
        251 bp
        0.7
        ICASA-6709-RU_S266_L001_R1_001
        95.2%
        54%
        251 bp
        0.5
        ICASA-6709-RU_S266_L001_R2_001
        93.1%
        53%
        251 bp
        0.5
        ICASA-6712-Fec_S289_L001_R1_001
        95.0%
        54%
        251 bp
        0.6
        ICASA-6712-Fec_S289_L001_R2_001
        93.0%
        52%
        251 bp
        0.6
        ICASA-6722-Fec_S318_L001_R1_001
        96.5%
        56%
        251 bp
        0.6
        ICASA-6722-Fec_S318_L001_R2_001
        94.3%
        54%
        251 bp
        0.6
        ICASA-6726-Fec_S163_L001_R1_001
        95.7%
        54%
        251 bp
        0.8
        ICASA-6726-Fec_S163_L001_R2_001
        94.6%
        52%
        251 bp
        0.8
        ICASA-6727-Fec_S27_L001_R1_001
        96.8%
        54%
        251 bp
        0.8
        ICASA-6727-Fec_S27_L001_R2_001
        94.6%
        51%
        250 bp
        0.8
        ICASA-6727-LI_S17_L001_R1_001
        96.4%
        54%
        251 bp
        1.0
        ICASA-6727-LI_S17_L001_R2_001
        94.7%
        51%
        251 bp
        1.0
        ICASA-6727-RU_S50_L001_R1_001
        95.8%
        54%
        251 bp
        0.7
        ICASA-6727-RU_S50_L001_R2_001
        93.0%
        52%
        251 bp
        0.7
        ICASA-6727-SI_S226_L001_R1_001
        93.9%
        56%
        251 bp
        0.6
        ICASA-6727-SI_S226_L001_R2_001
        95.1%
        54%
        251 bp
        0.6
        ICASA-6728-Fec_S36_L001_R1_001
        95.8%
        55%
        251 bp
        0.7
        ICASA-6728-Fec_S36_L001_R2_001
        94.8%
        52%
        251 bp
        0.7
        ICASA-6733-Fec_S4_L001_R1_001
        95.2%
        54%
        251 bp
        0.8
        ICASA-6733-Fec_S4_L001_R2_001
        93.8%
        52%
        251 bp
        0.8
        ICASA-6734-Fec_S250_L001_R1_001
        94.9%
        54%
        251 bp
        0.4
        ICASA-6734-Fec_S250_L001_R2_001
        92.8%
        51%
        251 bp
        0.4
        ICASA-6734-LI_S337_L001_R1_001
        69.0%
        54%
        251 bp
        0.0
        ICASA-6734-LI_S337_L001_R2_001
        60.4%
        53%
        251 bp
        0.0
        ICASA-6736-Fec_S52_L001_R1_001
        95.9%
        54%
        251 bp
        0.7
        ICASA-6736-Fec_S52_L001_R2_001
        93.5%
        51%
        250 bp
        0.7
        ICASA-6738-Fec_S171_L001_R1_001
        96.1%
        54%
        251 bp
        0.8
        ICASA-6738-Fec_S171_L001_R2_001
        94.9%
        52%
        251 bp
        0.8
        ICASA-6742-Fec_S2_L001_R1_001
        96.6%
        54%
        251 bp
        0.7
        ICASA-6742-Fec_S2_L001_R2_001
        94.6%
        52%
        251 bp
        0.7
        ICASA-6743-Fec_S231_L001_R1_001
        95.9%
        54%
        251 bp
        0.9
        ICASA-6743-Fec_S231_L001_R2_001
        94.5%
        51%
        251 bp
        0.9
        ICASA-6747-LI_S38_L001_R1_001
        95.4%
        54%
        251 bp
        0.8
        ICASA-6747-LI_S38_L001_R2_001
        94.3%
        52%
        251 bp
        0.8
        ICASA-6747-RU_S211_L001_R1_001
        95.8%
        54%
        251 bp
        0.7
        ICASA-6747-RU_S211_L001_R2_001
        92.8%
        53%
        251 bp
        0.7
        ICASA-6749-Fec_S291_L001_R1_001
        96.0%
        54%
        251 bp
        0.7
        ICASA-6749-Fec_S291_L001_R2_001
        94.0%
        52%
        251 bp
        0.7
        ICASA-6752-Fec_S237_L001_R1_001
        94.9%
        54%
        251 bp
        0.6
        ICASA-6752-Fec_S237_L001_R2_001
        94.9%
        52%
        251 bp
        0.6
        ICASA-6755-Fec_S324_L001_R1_001
        95.9%
        55%
        251 bp
        0.5
        ICASA-6755-Fec_S324_L001_R2_001
        93.7%
        52%
        251 bp
        0.5
        ICASA-6755-LI_S212_L001_R1_001
        95.2%
        54%
        251 bp
        0.6
        ICASA-6755-LI_S212_L001_R2_001
        93.4%
        52%
        251 bp
        0.6
        ICASA-6755-RU_S293_L001_R1_001
        95.3%
        55%
        251 bp
        0.7
        ICASA-6755-RU_S293_L001_R2_001
        92.6%
        53%
        251 bp
        0.7
        ICASA-6755-SI_S92_L001_R1_001
        96.0%
        57%
        251 bp
        0.7
        ICASA-6755-SI_S92_L001_R2_001
        94.3%
        55%
        250 bp
        0.7
        ICASA-6756-Fec_S105_L001_R1_001
        95.7%
        54%
        251 bp
        0.7
        ICASA-6756-Fec_S105_L001_R2_001
        93.3%
        52%
        251 bp
        0.7
        ICASA-6758-Fec_S181_L001_R1_001
        95.6%
        54%
        251 bp
        0.5
        ICASA-6758-Fec_S181_L001_R2_001
        94.8%
        52%
        251 bp
        0.5
        ICASA-6759-Fec_S141_L001_R1_001
        96.6%
        54%
        251 bp
        0.8
        ICASA-6759-Fec_S141_L001_R2_001
        94.4%
        51%
        251 bp
        0.8
        ICASA-6760-Fec_S119_L001_R1_001
        96.5%
        54%
        251 bp
        0.9
        ICASA-6760-Fec_S119_L001_R2_001
        94.9%
        52%
        251 bp
        0.9
        ICASA-6761-SI_S316_L001_R1_001
        97.0%
        57%
        251 bp
        0.6
        ICASA-6761-SI_S316_L001_R2_001
        94.9%
        54%
        251 bp
        0.6
        ICASA-6762-Fec_S121_L001_R1_001
        95.9%
        54%
        251 bp
        1.0
        ICASA-6762-Fec_S121_L001_R2_001
        94.1%
        51%
        251 bp
        1.0
        ICASA-6763-Fec_S21_L001_R1_001
        96.5%
        55%
        251 bp
        0.8
        ICASA-6763-Fec_S21_L001_R2_001
        94.3%
        52%
        251 bp
        0.8
        ICASA-6766-Fec_S132_L001_R1_001
        96.5%
        54%
        251 bp
        0.9
        ICASA-6766-Fec_S132_L001_R2_001
        94.7%
        51%
        251 bp
        0.9
        ICASA-6766-LI_S334_L001_R1_001
        84.4%
        43%
        247 bp
        0.0
        ICASA-6766-LI_S334_L001_R2_001
        77.3%
        42%
        251 bp
        0.0
        ICASA-6766-SI_S112_L001_R1_001
        90.8%
        55%
        251 bp
        0.0
        ICASA-6766-SI_S112_L001_R2_001
        88.0%
        52%
        251 bp
        0.0
        ICASA-6767-Fec_S134_L001_R1_001
        96.7%
        54%
        251 bp
        0.9
        ICASA-6767-Fec_S134_L001_R2_001
        95.0%
        52%
        251 bp
        0.9
        ICASA-6768-Fec_S152_L001_R1_001
        96.4%
        55%
        251 bp
        0.8
        ICASA-6768-Fec_S152_L001_R2_001
        94.7%
        52%
        251 bp
        0.8
        ICASA-6768-SI_S330_L001_R1_001
        33.9%
        53%
        247 bp
        0.0
        ICASA-6768-SI_S330_L001_R2_001
        17.8%
        51%
        242 bp
        0.0
        ICASA-6769-Fec_S51_L001_R1_001
        96.6%
        54%
        251 bp
        0.8
        ICASA-6769-Fec_S51_L001_R2_001
        94.4%
        51%
        250 bp
        0.8
        ICASA-6769-SI_S333_L001_R1_001
        95.6%
        55%
        251 bp
        0.6
        ICASA-6769-SI_S333_L001_R2_001
        95.6%
        54%
        251 bp
        0.6
        ICASA-6770-Fec_S98_L001_R1_001
        96.3%
        54%
        251 bp
        0.7
        ICASA-6770-Fec_S98_L001_R2_001
        94.0%
        51%
        250 bp
        0.7
        ICASA-6779-Fec_S220_L001_R1_001
        95.5%
        55%
        251 bp
        0.6
        ICASA-6779-Fec_S220_L001_R2_001
        95.2%
        52%
        251 bp
        0.6
        ICASA-6785-Fec_S255_L001_R1_001
        96.6%
        54%
        251 bp
        0.8
        ICASA-6785-Fec_S255_L001_R2_001
        94.7%
        51%
        251 bp
        0.8
        ICASA-6786-Fec_S301_L001_R1_001
        95.9%
        54%
        251 bp
        0.7
        ICASA-6786-Fec_S301_L001_R2_001
        94.2%
        52%
        251 bp
        0.7
        ICASA-6789-Fec_S232_L001_R1_001
        95.4%
        54%
        251 bp
        0.6
        ICASA-6789-Fec_S232_L001_R2_001
        94.6%
        52%
        251 bp
        0.6
        ICASA-6794-Fec_S346_L001_R1_001
        96.3%
        54%
        251 bp
        0.8
        ICASA-6794-Fec_S346_L001_R2_001
        94.6%
        51%
        250 bp
        0.8
        ICASA-6797-Fec_S68_L001_R1_001
        96.0%
        54%
        251 bp
        0.8
        ICASA-6797-Fec_S68_L001_R2_001
        93.9%
        51%
        251 bp
        0.8
        ICASA-6799-Fec_S48_L001_R1_001
        94.4%
        54%
        251 bp
        0.5
        ICASA-6799-Fec_S48_L001_R2_001
        94.1%
        52%
        251 bp
        0.5
        ICASA-6803-Fec_S243_L001_R1_001
        96.3%
        54%
        251 bp
        0.9
        ICASA-6803-Fec_S243_L001_R2_001
        94.7%
        51%
        251 bp
        0.9
        ICASA-6803-RU_S259_L001_R1_001
        95.8%
        54%
        251 bp
        0.6
        ICASA-6803-RU_S259_L001_R2_001
        93.1%
        52%
        251 bp
        0.6
        ICASA-6803-SI_S128_L001_R1_001
        97.2%
        55%
        251 bp
        0.6
        ICASA-6803-SI_S128_L001_R2_001
        95.8%
        52%
        251 bp
        0.6
        ICASA-6811-Fec_S158_L001_R1_001
        96.2%
        54%
        251 bp
        0.8
        ICASA-6811-Fec_S158_L001_R2_001
        94.0%
        52%
        251 bp
        0.8
        ICASA-6814-Fec_S116_L001_R1_001
        96.0%
        55%
        251 bp
        0.7
        ICASA-6814-Fec_S116_L001_R2_001
        95.3%
        52%
        251 bp
        0.7
        ICASA-6817-LI_S41_L001_R1_001
        96.0%
        54%
        251 bp
        1.0
        ICASA-6817-LI_S41_L001_R2_001
        93.6%
        53%
        251 bp
        1.0
        ICASA-6817-RU_S162_L001_R1_001
        95.8%
        54%
        251 bp
        1.0
        ICASA-6817-RU_S162_L001_R2_001
        93.8%
        52%
        251 bp
        1.0
        ICASA-6817-SI_S283_L001_R1_001
        94.4%
        55%
        251 bp
        0.4
        ICASA-6817-SI_S283_L001_R2_001
        93.4%
        53%
        251 bp
        0.4
        ICASA-6819-Fec_S12_L001_R1_001
        96.6%
        54%
        251 bp
        0.8
        ICASA-6819-Fec_S12_L001_R2_001
        94.7%
        51%
        251 bp
        0.8
        ICASA-6819-RU_S49_L001_R1_001
        96.4%
        54%
        251 bp
        0.7
        ICASA-6819-RU_S49_L001_R2_001
        93.2%
        53%
        251 bp
        0.7
        ICASA-7147-Fec_S284_L001_R1_001
        96.1%
        54%
        251 bp
        0.5
        ICASA-7147-Fec_S284_L001_R2_001
        94.5%
        51%
        251 bp
        0.5
        ICASA-7147-SI_S339_L001_R1_001
        95.0%
        56%
        251 bp
        0.6
        ICASA-7147-SI_S339_L001_R2_001
        93.0%
        55%
        251 bp
        0.6
        ICASA-7151-Fec_S53_L001_R1_001
        96.4%
        54%
        251 bp
        0.7
        ICASA-7151-Fec_S53_L001_R2_001
        94.1%
        51%
        250 bp
        0.7
        ICASA-7153-Fec_S184_L001_R1_001
        95.4%
        53%
        251 bp
        0.8
        ICASA-7153-Fec_S184_L001_R2_001
        94.2%
        51%
        250 bp
        0.8
        ICASA-7153-LI_S228_L001_R1_001
        95.8%
        54%
        251 bp
        0.7
        ICASA-7153-LI_S228_L001_R2_001
        93.9%
        52%
        251 bp
        0.7
        ICASA-7153-RU_S155_L001_R1_001
        95.4%
        55%
        251 bp
        0.7
        ICASA-7153-RU_S155_L001_R2_001
        92.6%
        53%
        251 bp
        0.7
        ICASA-7153-SI_S178_L001_R1_001
        96.3%
        55%
        251 bp
        0.5
        ICASA-7153-SI_S178_L001_R2_001
        94.6%
        52%
        251 bp
        0.5
        ICASA-7155-LI_S201_L001_R1_001
        95.9%
        53%
        251 bp
        0.7
        ICASA-7155-LI_S201_L001_R2_001
        93.5%
        51%
        251 bp
        0.7
        ICASA-7159-Fec_S88_L001_R1_001
        96.4%
        54%
        251 bp
        0.6
        ICASA-7159-Fec_S88_L001_R2_001
        94.3%
        52%
        251 bp
        0.6
        ICASA-7159-LI_S69_L001_R1_001
        95.7%
        53%
        251 bp
        0.8
        ICASA-7159-LI_S69_L001_R2_001
        93.8%
        51%
        251 bp
        0.8
        ICASA-7162-Fec_S145_L001_R1_001
        96.6%
        55%
        251 bp
        0.8
        ICASA-7162-Fec_S145_L001_R2_001
        94.8%
        52%
        250 bp
        0.8
        ICASA-7163-Fec_S143_L001_R1_001
        95.3%
        54%
        251 bp
        0.7
        ICASA-7163-Fec_S143_L001_R2_001
        94.5%
        51%
        250 bp
        0.7
        ICASA-7163-LI_S23_L001_R1_001
        95.1%
        54%
        251 bp
        0.8
        ICASA-7163-LI_S23_L001_R2_001
        93.5%
        51%
        251 bp
        0.8
        ICASA-7163-RU_S16_L001_R1_001
        96.1%
        55%
        251 bp
        0.7
        ICASA-7163-RU_S16_L001_R2_001
        92.9%
        53%
        251 bp
        0.7
        ICASA-7163-SI_S302_L001_R1_001
        96.2%
        55%
        251 bp
        0.5
        ICASA-7163-SI_S302_L001_R2_001
        94.6%
        52%
        251 bp
        0.5
        ICASA-7168-Fec_S189_L001_R1_001
        96.6%
        54%
        251 bp
        0.7
        ICASA-7168-Fec_S189_L001_R2_001
        94.8%
        51%
        250 bp
        0.7
        ICASA-7173-Fec_S148_L001_R1_001
        96.4%
        54%
        251 bp
        0.8
        ICASA-7173-Fec_S148_L001_R2_001
        94.1%
        52%
        250 bp
        0.8
        ICASA-7174-Fec_S197_L001_R1_001
        94.8%
        53%
        251 bp
        0.8
        ICASA-7174-Fec_S197_L001_R2_001
        93.6%
        51%
        250 bp
        0.8
        ICASA-7180-RU_S153_L001_R1_001
        95.6%
        55%
        251 bp
        0.8
        ICASA-7180-RU_S153_L001_R2_001
        93.2%
        53%
        251 bp
        0.8
        ICASA-7181-Fec_S22_L001_R1_001
        96.4%
        55%
        251 bp
        0.8
        ICASA-7181-Fec_S22_L001_R2_001
        94.3%
        52%
        251 bp
        0.8
        ICASA-7182-Fec_S104_L001_R1_001
        95.1%
        54%
        251 bp
        0.6
        ICASA-7182-Fec_S104_L001_R2_001
        93.5%
        51%
        250 bp
        0.6
        ICASA-7186-LI_S332_L001_R1_001
        86.4%
        55%
        251 bp
        0.0
        ICASA-7186-LI_S332_L001_R2_001
        78.0%
        52%
        251 bp
        0.0
        ICASA-7186-RU_S77_L001_R1_001
        96.3%
        54%
        251 bp
        0.8
        ICASA-7186-RU_S77_L001_R2_001
        94.1%
        53%
        250 bp
        0.8
        ICASA-7186-SI_S335_L001_R1_001
        9.1%
        54%
        251 bp
        0.0
        ICASA-7186-SI_S335_L001_R2_001
        0.0%
        52%
        251 bp
        0.0
        ICASA-7191-Fec_S261_L001_R1_001
        95.9%
        54%
        251 bp
        0.6
        ICASA-7191-Fec_S261_L001_R2_001
        94.1%
        52%
        251 bp
        0.6
        ICASA-7193-Fec_S272_L001_R1_001
        93.9%
        54%
        251 bp
        0.5
        ICASA-7193-Fec_S272_L001_R2_001
        94.0%
        52%
        251 bp
        0.5
        ICASA-7200-Fec_S103_L001_R1_001
        96.5%
        54%
        251 bp
        0.7
        ICASA-7200-Fec_S103_L001_R2_001
        94.4%
        52%
        251 bp
        0.7
        ICASA-7201-Fec_S192_L001_R1_001
        95.2%
        54%
        251 bp
        0.7
        ICASA-7201-Fec_S192_L001_R2_001
        94.1%
        52%
        250 bp
        0.7
        ICASA-7202-Fec_S122_L001_R1_001
        96.5%
        54%
        251 bp
        0.7
        ICASA-7202-Fec_S122_L001_R2_001
        94.4%
        52%
        251 bp
        0.7
        ICASA-7207-Fec_S130_L001_R1_001
        96.4%
        55%
        251 bp
        0.9
        ICASA-7207-Fec_S130_L001_R2_001
        94.5%
        52%
        251 bp
        0.9
        ICASA-7208-Fec_S275_L001_R1_001
        96.1%
        54%
        251 bp
        0.7
        ICASA-7208-Fec_S275_L001_R2_001
        93.7%
        51%
        251 bp
        0.7
        ICASA-7210-Fec_S239_L001_R1_001
        95.8%
        54%
        251 bp
        0.6
        ICASA-7210-Fec_S239_L001_R2_001
        94.2%
        51%
        251 bp
        0.6
        ICASA-7211-Fec_S11_L001_R1_001
        96.5%
        54%
        251 bp
        0.9
        ICASA-7211-Fec_S11_L001_R2_001
        94.7%
        51%
        251 bp
        0.9
        ICASA-7213-Fec_S142_L001_R1_001
        96.5%
        54%
        251 bp
        0.8
        ICASA-7213-Fec_S142_L001_R2_001
        94.6%
        52%
        250 bp
        0.8
        ICASA-7214-Fec_S117_L001_R1_001
        96.4%
        55%
        251 bp
        0.9
        ICASA-7214-Fec_S117_L001_R2_001
        94.8%
        52%
        251 bp
        0.9
        ICASA-7215-Fec_S45_L001_R1_001
        96.3%
        54%
        251 bp
        0.8
        ICASA-7215-Fec_S45_L001_R2_001
        94.3%
        51%
        250 bp
        0.8
        ICASA-7215-LI_S127_L001_R1_001
        95.2%
        54%
        251 bp
        0.7
        ICASA-7215-LI_S127_L001_R2_001
        93.8%
        51%
        251 bp
        0.7
        ICASA-7215-RU_S7_L001_R1_001
        97.0%
        54%
        251 bp
        0.8
        ICASA-7215-RU_S7_L001_R2_001
        95.4%
        53%
        251 bp
        0.8
        ICASA-7217-Fec_S260_L001_R1_001
        95.8%
        54%
        251 bp
        0.6
        ICASA-7217-Fec_S260_L001_R2_001
        93.8%
        52%
        251 bp
        0.6
        ICASA-7217-RU_S198_L001_R1_001
        96.0%
        54%
        251 bp
        0.7
        ICASA-7217-RU_S198_L001_R2_001
        93.6%
        53%
        251 bp
        0.7
        ICASA-7217-SI_S271_L001_R1_001
        96.1%
        56%
        251 bp
        0.7
        ICASA-7217-SI_S271_L001_R2_001
        93.4%
        55%
        251 bp
        0.7
        ICASA-7228-Fec_S138_L001_R1_001
        96.4%
        54%
        251 bp
        0.8
        ICASA-7228-Fec_S138_L001_R2_001
        94.7%
        52%
        250 bp
        0.8
        ICASA-7231-Fec_S344_L001_R1_001
        93.7%
        53%
        251 bp
        0.9
        ICASA-7231-Fec_S344_L001_R2_001
        93.7%
        51%
        250 bp
        0.9
        ICASA-7232-Fec_S67_L001_R1_001
        96.8%
        55%
        251 bp
        0.7
        ICASA-7232-Fec_S67_L001_R2_001
        95.0%
        52%
        251 bp
        0.7
        ICASA-7234-Fec_S109_L001_R1_001
        94.5%
        54%
        251 bp
        0.5
        ICASA-7234-Fec_S109_L001_R2_001
        93.6%
        51%
        251 bp
        0.5
        ICASA-7235-Fec_S230_L001_R1_001
        95.4%
        55%
        251 bp
        0.7
        ICASA-7235-Fec_S230_L001_R2_001
        94.7%
        52%
        251 bp
        0.7
        ICASA-7236-Fec_S170_L001_R1_001
        96.0%
        54%
        251 bp
        0.9
        ICASA-7236-Fec_S170_L001_R2_001
        94.7%
        51%
        251 bp
        0.9
        ICASA-7237-LI_S61_L001_R1_001
        93.7%
        54%
        251 bp
        0.6
        ICASA-7237-LI_S61_L001_R2_001
        94.4%
        52%
        250 bp
        0.6
        ICASA-7246-Fec_S115_L001_R1_001
        96.2%
        54%
        251 bp
        0.9
        ICASA-7246-Fec_S115_L001_R2_001
        94.5%
        52%
        251 bp
        0.9
        ICASA-7249-RU_S278_L001_R1_001
        95.2%
        54%
        251 bp
        0.6
        ICASA-7249-RU_S278_L001_R2_001
        92.9%
        53%
        251 bp
        0.6
        ICASA-7252-Fec_S169_L001_R1_001
        96.2%
        54%
        251 bp
        0.9
        ICASA-7252-Fec_S169_L001_R2_001
        94.5%
        52%
        251 bp
        0.9
        ICASA-7252-RU_S244_L001_R1_001
        95.5%
        54%
        251 bp
        0.7
        ICASA-7252-RU_S244_L001_R2_001
        93.2%
        52%
        251 bp
        0.7
        ICASA-7252-SI_S288_L001_R1_001
        94.9%
        55%
        251 bp
        0.4
        ICASA-7252-SI_S288_L001_R2_001
        94.5%
        53%
        251 bp
        0.4
        ICASA-7253-Fec_S209_L001_R1_001
        96.2%
        54%
        251 bp
        0.7
        ICASA-7253-Fec_S209_L001_R2_001
        94.0%
        52%
        251 bp
        0.7
        ICASA-7255-Fec_S76_L001_R1_001
        96.3%
        55%
        251 bp
        0.6
        ICASA-7255-Fec_S76_L001_R2_001
        94.3%
        52%
        251 bp
        0.6
        ICASA-7261-Fec_S126_L001_R1_001
        96.3%
        55%
        251 bp
        0.8
        ICASA-7261-Fec_S126_L001_R2_001
        94.5%
        52%
        251 bp
        0.8
        ICASA-7268-Fec_S320_L001_R1_001
        96.3%
        54%
        251 bp
        0.6
        ICASA-7268-Fec_S320_L001_R2_001
        94.0%
        52%
        251 bp
        0.6
        ICASA-7271-RU_S213_L001_R1_001
        96.2%
        54%
        251 bp
        0.7
        ICASA-7271-RU_S213_L001_R2_001
        93.3%
        53%
        251 bp
        0.7
        ICASA-7271-SI_S265_L001_R1_001
        95.3%
        56%
        251 bp
        0.3
        ICASA-7271-SI_S265_L001_R2_001
        93.0%
        54%
        251 bp
        0.3
        ICASA-7281-Fec_S64_L001_R1_001
        96.3%
        54%
        251 bp
        0.8
        ICASA-7281-Fec_S64_L001_R2_001
        94.3%
        52%
        251 bp
        0.8
        ICASA-7282-Fec_S106_L001_R1_001
        96.6%
        54%
        251 bp
        0.6
        ICASA-7282-Fec_S106_L001_R2_001
        94.3%
        52%
        251 bp
        0.6
        ICASA-7282-RU_S179_L001_R1_001
        94.8%
        54%
        251 bp
        0.7
        ICASA-7282-RU_S179_L001_R2_001
        93.2%
        52%
        251 bp
        0.7
        ICASA-7287-Fec_S279_L001_R1_001
        94.3%
        54%
        251 bp
        0.4
        ICASA-7287-Fec_S279_L001_R2_001
        94.3%
        51%
        251 bp
        0.4
        ICASA-7287-LI_S313_L001_R1_001
        96.2%
        54%
        251 bp
        0.9
        ICASA-7287-LI_S313_L001_R2_001
        94.6%
        52%
        251 bp
        0.9
        ICASA-7287-SI_S343_L001_R1_001
        89.9%
        55%
        251 bp
        0.0
        ICASA-7287-SI_S343_L001_R2_001
        85.8%
        53%
        251 bp
        0.0
        ICASA-7289-Fec_S173_L001_R1_001
        97.2%
        54%
        251 bp
        0.8
        ICASA-7289-Fec_S173_L001_R2_001
        95.6%
        51%
        251 bp
        0.8
        ICASA-7290-Fec_S190_L001_R1_001
        95.4%
        54%
        251 bp
        0.7
        ICASA-7290-Fec_S190_L001_R2_001
        94.7%
        52%
        251 bp
        0.7
        ICASA-7294-Fec_S55_L001_R1_001
        95.7%
        56%
        251 bp
        0.6
        ICASA-7294-Fec_S55_L001_R2_001
        94.7%
        54%
        251 bp
        0.6
        ICASA-7294-LI_S99_L001_R1_001
        96.5%
        57%
        251 bp
        0.7
        ICASA-7294-LI_S99_L001_R2_001
        95.0%
        56%
        251 bp
        0.7
        ICASA-7294-SI_S300_L001_R1_001
        95.0%
        55%
        251 bp
        0.5
        ICASA-7294-SI_S300_L001_R2_001
        94.8%
        53%
        251 bp
        0.5
        ICASA-7295-Fec_S133_L001_R1_001
        96.6%
        55%
        251 bp
        0.9
        ICASA-7295-Fec_S133_L001_R2_001
        94.5%
        52%
        251 bp
        0.9
        ICASA-7302-Fec_S70_L001_R1_001
        95.1%
        54%
        251 bp
        0.6
        ICASA-7302-Fec_S70_L001_R2_001
        93.7%
        51%
        251 bp
        0.6
        ICASA-7303-Fec_S305_L001_R1_001
        95.7%
        56%
        251 bp
        0.6
        ICASA-7303-Fec_S305_L001_R2_001
        93.6%
        54%
        251 bp
        0.6
        ICASA-7310-Fec_S167_L001_R1_001
        96.6%
        54%
        251 bp
        1.1
        ICASA-7310-Fec_S167_L001_R2_001
        94.9%
        51%
        251 bp
        1.1
        ICASA-7311-Fec_S46_L001_R1_001
        95.8%
        54%
        251 bp
        0.7
        ICASA-7311-Fec_S46_L001_R2_001
        94.3%
        52%
        251 bp
        0.7
        ICASA-7312-Fec_S107_L001_R1_001
        95.3%
        54%
        251 bp
        0.6
        ICASA-7312-Fec_S107_L001_R2_001
        93.2%
        52%
        251 bp
        0.6
        ICASA-7313-Fec_S203_L001_R1_001
        96.1%
        54%
        251 bp
        0.6
        ICASA-7313-Fec_S203_L001_R2_001
        94.0%
        51%
        251 bp
        0.6
        ICASA-7320-Fec_S223_L001_R1_001
        96.6%
        54%
        251 bp
        0.8
        ICASA-7320-Fec_S223_L001_R2_001
        94.7%
        51%
        251 bp
        0.8
        ICASA-7322-Fec_S263_L001_R1_001
        95.7%
        54%
        251 bp
        0.6
        ICASA-7322-Fec_S263_L001_R2_001
        94.1%
        52%
        251 bp
        0.6
        ICASA-7323-Fec_S42_L001_R1_001
        95.5%
        54%
        251 bp
        0.8
        ICASA-7323-Fec_S42_L001_R2_001
        93.6%
        52%
        251 bp
        0.8
        ICASA-7333-Fec_S180_L001_R1_001
        96.3%
        54%
        251 bp
        0.8
        ICASA-7333-Fec_S180_L001_R2_001
        94.2%
        51%
        251 bp
        0.8
        ICASA-7334-Fec_S183_L001_R1_001
        96.8%
        54%
        251 bp
        0.8
        ICASA-7334-Fec_S183_L001_R2_001
        95.4%
        51%
        251 bp
        0.8
        ICASA-7335-Fec_S131_L001_R1_001
        96.9%
        54%
        251 bp
        0.9
        ICASA-7335-Fec_S131_L001_R2_001
        95.1%
        52%
        251 bp
        0.9
        ICASA-7341-Fec_S13_L001_R1_001
        95.1%
        54%
        251 bp
        0.7
        ICASA-7341-Fec_S13_L001_R2_001
        94.6%
        51%
        250 bp
        0.7
        ICASA-7344-Fec_S276_L001_R1_001
        93.3%
        54%
        251 bp
        0.5
        ICASA-7344-Fec_S276_L001_R2_001
        93.0%
        51%
        251 bp
        0.5
        ICASA-7345-Fec_S295_L001_R1_001
        96.2%
        54%
        251 bp
        0.8
        ICASA-7345-Fec_S295_L001_R2_001
        94.4%
        52%
        251 bp
        0.8
        ICASA-7348-Fec_S63_L001_R1_001
        96.7%
        55%
        251 bp
        0.8
        ICASA-7348-Fec_S63_L001_R2_001
        94.7%
        52%
        251 bp
        0.8
        ICASA-7349-Fec_S24_L001_R1_001
        96.6%
        54%
        251 bp
        0.9
        ICASA-7349-Fec_S24_L001_R2_001
        94.9%
        52%
        251 bp
        0.9
        ICASA-7351-Fec_S114_L001_R1_001
        96.4%
        55%
        251 bp
        0.9
        ICASA-7351-Fec_S114_L001_R2_001
        94.9%
        52%
        251 bp
        0.9
        ICASA-7356-Fec_S264_L001_R1_001
        95.5%
        54%
        251 bp
        0.6
        ICASA-7356-Fec_S264_L001_R2_001
        94.0%
        51%
        251 bp
        0.6
        ICASA-7356-RU_S137_L001_R1_001
        96.7%
        54%
        251 bp
        0.9
        ICASA-7356-RU_S137_L001_R2_001
        94.3%
        54%
        251 bp
        0.9
        ICASA-7358-LI_S75_L001_R1_001
        95.7%
        54%
        251 bp
        0.7
        ICASA-7358-LI_S75_L001_R2_001
        94.0%
        52%
        251 bp
        0.7
        ICASA-7358-SI_S6_L001_R1_001
        97.0%
        56%
        251 bp
        0.7
        ICASA-7358-SI_S6_L001_R2_001
        94.4%
        53%
        251 bp
        0.7
        ICASA-7359-Fec_S227_L001_R1_001
        94.6%
        54%
        251 bp
        0.5
        ICASA-7359-Fec_S227_L001_R2_001
        94.7%
        52%
        251 bp
        0.5
        ICASA-7359-SI_S331_L001_R1_001
        90.8%
        56%
        251 bp
        0.0
        ICASA-7359-SI_S331_L001_R2_001
        85.7%
        54%
        251 bp
        0.0
        ICASA-7363-Fec_S168_L001_R1_001
        96.4%
        54%
        251 bp
        0.9
        ICASA-7363-Fec_S168_L001_R2_001
        94.5%
        51%
        251 bp
        0.9
        ICASA-7373-LI_S338_L001_R1_001
        94.4%
        56%
        251 bp
        0.7
        ICASA-7373-LI_S338_L001_R2_001
        92.5%
        54%
        251 bp
        0.7
        ICASA-7375-Fec_S83_L001_R1_001
        95.8%
        54%
        251 bp
        0.7
        ICASA-7375-Fec_S83_L001_R2_001
        93.4%
        52%
        251 bp
        0.7
        ICASA-7377-Fec_S253_L001_R1_001
        95.9%
        54%
        251 bp
        0.7
        ICASA-7377-Fec_S253_L001_R2_001
        94.1%
        52%
        251 bp
        0.7
        ICASA-7378-Fec_S31_L001_R1_001
        96.4%
        54%
        251 bp
        0.7
        ICASA-7378-Fec_S31_L001_R2_001
        94.1%
        51%
        251 bp
        0.7
        ICASA-7379-Fec_S306_L001_R1_001
        95.9%
        53%
        251 bp
        0.7
        ICASA-7379-Fec_S306_L001_R2_001
        93.9%
        51%
        250 bp
        0.7
        ICASA-7388-Fec_S206_L001_R1_001
        96.3%
        54%
        251 bp
        0.6
        ICASA-7388-Fec_S206_L001_R2_001
        94.5%
        52%
        251 bp
        0.6
        ICASA-7390-LI_S25_L001_R1_001
        95.9%
        54%
        251 bp
        0.8
        ICASA-7390-LI_S25_L001_R2_001
        93.9%
        52%
        251 bp
        0.8
        ICASA-7390-SI_S258_L001_R1_001
        95.7%
        57%
        251 bp
        0.4
        ICASA-7390-SI_S258_L001_R2_001
        93.6%
        55%
        251 bp
        0.4
        ICASA-EBn4_S28_L001_R1_001
        0.0%
        53%
        251 bp
        0.0
        ICASA-EBn4_S28_L001_R2_001
        0.0%
        51%
        251 bp
        0.0
        ICASA-EBn5_S125_L001_R1_001
        85.7%
        54%
        251 bp
        0.0
        ICASA-EBn5_S125_L001_R2_001
        81.4%
        51%
        251 bp
        0.0
        ICASA-EBn6_S207_L001_R1_001
        32.1%
        54%
        251 bp
        0.0
        ICASA-EBn6_S207_L001_R2_001
        19.8%
        51%
        251 bp
        0.0
        ICASA-EBn7_S299_L001_R1_001
        70.5%
        55%
        251 bp
        0.0
        ICASA-EBn7_S299_L001_R2_001
        55.5%
        54%
        251 bp
        0.0
        ICASA-EBn8_S326_L001_R1_001
        42.5%
        55%
        251 bp
        0.0
        ICASA-EBn8_S326_L001_R2_001
        26.2%
        52%
        251 bp
        0.0
        ICASA-NTC10_S66_L001_R1_001
        36.8%
        53%
        251 bp
        0.0
        ICASA-NTC10_S66_L001_R2_001
        10.5%
        53%
        251 bp
        0.0
        ICASA-NTC11_S113_L001_R1_001
        0.0%
        54%
        251 bp
        0.0
        ICASA-NTC11_S113_L001_R2_001
        0.0%
        55%
        251 bp
        0.0
        ICASA-NTC12_S160_L001_R1_001
        33.9%
        54%
        251 bp
        0.0
        ICASA-NTC12_S160_L001_R2_001
        18.6%
        52%
        251 bp
        0.0
        ICASA-NTC13_S200_L001_R1_001
        50.0%
        0%
        35 bp
        0.0
        ICASA-NTC13_S200_L001_R2_001
        50.0%
        0%
        35 bp
        0.0
        ICASA-NTC15_S286_L001_R1_001
        42.7%
        55%
        251 bp
        0.0
        ICASA-NTC15_S286_L001_R2_001
        26.5%
        52%
        251 bp
        0.0
        ICASA-NTC9_S18_L001_R1_001
        35.8%
        53%
        251 bp
        0.0
        ICASA-NTC9_S18_L001_R2_001
        17.9%
        51%
        251 bp
        0.0
        TCFA-Fec-01_S357_L001_R1_001
        93.8%
        53%
        251 bp
        0.6
        TCFA-Fec-01_S357_L001_R2_001
        94.4%
        52%
        251 bp
        0.6
        TCFA-Fec-01reEx_S358_L001_R1_001
        95.7%
        53%
        251 bp
        0.7
        TCFA-Fec-01reEx_S358_L001_R2_001
        93.9%
        51%
        251 bp
        0.7
        TCFA-Fec-06_S359_L001_R1_001
        95.6%
        53%
        251 bp
        0.7
        TCFA-Fec-06_S359_L001_R2_001
        93.2%
        51%
        251 bp
        0.7
        TCFA-Fec-06reEx_S360_L001_R1_001
        95.1%
        53%
        251 bp
        0.7
        TCFA-Fec-06reEx_S360_L001_R2_001
        93.0%
        51%
        251 bp
        0.7
        TCFA-Fec-10_S361_L001_R1_001
        93.7%
        53%
        251 bp
        0.6
        TCFA-Fec-10_S361_L001_R2_001
        93.4%
        52%
        251 bp
        0.6
        TCFA-Fec-10reEx_S362_L001_R1_001
        94.6%
        53%
        251 bp
        0.7
        TCFA-Fec-10reEx_S362_L001_R2_001
        92.8%
        52%
        251 bp
        0.7
        TCFA-Fec-17_S363_L001_R1_001
        95.7%
        54%
        251 bp
        0.7
        TCFA-Fec-17_S363_L001_R2_001
        93.6%
        51%
        251 bp
        0.7
        TCFA-Fec-17reEx_S364_L001_R1_001
        95.0%
        53%
        251 bp
        0.8
        TCFA-Fec-17reEx_S364_L001_R2_001
        94.3%
        52%
        251 bp
        0.8
        TCFA-LIFl-01_S365_L001_R1_001
        96.0%
        54%
        251 bp
        0.7
        TCFA-LIFl-01_S365_L001_R2_001
        94.6%
        52%
        251 bp
        0.7
        TCFA-LIFl-01reEx_S366_L001_R1_001
        94.7%
        53%
        251 bp
        0.7
        TCFA-LIFl-01reEx_S366_L001_R2_001
        94.1%
        52%
        251 bp
        0.7
        TCFA-LIFl-06_S367_L001_R1_001
        92.4%
        54%
        251 bp
        0.6
        TCFA-LIFl-06_S367_L001_R2_001
        93.0%
        52%
        251 bp
        0.6
        TCFA-LIFl-06reEx_S368_L001_R1_001
        94.6%
        54%
        251 bp
        0.8
        TCFA-LIFl-06reEx_S368_L001_R2_001
        93.1%
        52%
        251 bp
        0.8
        TCFA-LIFl-10_S369_L001_R1_001
        95.4%
        54%
        251 bp
        0.7
        TCFA-LIFl-10_S369_L001_R2_001
        93.2%
        52%
        251 bp
        0.7
        TCFA-LIFl-10reEx_S370_L001_R1_001
        94.8%
        54%
        251 bp
        0.8
        TCFA-LIFl-10reEx_S370_L001_R2_001
        92.9%
        52%
        251 bp
        0.8
        TCFA-LIFl-17_S371_L001_R1_001
        95.6%
        54%
        251 bp
        0.8
        TCFA-LIFl-17_S371_L001_R2_001
        93.4%
        52%
        251 bp
        0.8
        TCFA-LIFl-17reEx_S372_L001_R1_001
        95.3%
        54%
        251 bp
        0.9
        TCFA-LIFl-17reEx_S372_L001_R2_001
        93.8%
        52%
        251 bp
        0.9
        TCFA-LITi-01_S373_L001_R1_001
        95.3%
        53%
        251 bp
        0.6
        TCFA-LITi-01_S373_L001_R2_001
        94.3%
        51%
        251 bp
        0.6
        TCFA-LITi-01reEx_S374_L001_R1_001
        95.8%
        53%
        251 bp
        0.7
        TCFA-LITi-01reEx_S374_L001_R2_001
        94.0%
        52%
        251 bp
        0.7
        TCFA-LITi-06_S375_L001_R1_001
        95.8%
        54%
        251 bp
        0.7
        TCFA-LITi-06_S375_L001_R2_001
        93.8%
        51%
        251 bp
        0.7
        TCFA-LITi-06reEx_S376_L001_R1_001
        95.1%
        54%
        251 bp
        0.7
        TCFA-LITi-06reEx_S376_L001_R2_001
        93.3%
        51%
        251 bp
        0.7
        TCFA-LITi-10_S377_L001_R1_001
        95.5%
        54%
        251 bp
        0.8
        TCFA-LITi-10_S377_L001_R2_001
        93.3%
        52%
        251 bp
        0.8
        TCFA-LITi-10reEx_S378_L001_R1_001
        96.1%
        54%
        251 bp
        0.8
        TCFA-LITi-10reEx_S378_L001_R2_001
        93.6%
        52%
        251 bp
        0.8
        TCFA-LITi-17_S379_L001_R1_001
        95.8%
        54%
        251 bp
        0.8
        TCFA-LITi-17_S379_L001_R2_001
        94.0%
        52%
        251 bp
        0.8
        TCFA-LITi-17reEx_S380_L001_R1_001
        95.3%
        54%
        251 bp
        0.6
        TCFA-LITi-17reEx_S380_L001_R2_001
        93.2%
        52%
        251 bp
        0.6
        TCFA-NTCre1_S356_L001_R1_001
        0.0%
        59%
        37 bp
        0.0
        TCFA-NTCre1_S356_L001_R2_001
        0.0%
        59%
        37 bp
        0.0
        UDP0290_S388_L001_R1_001
        96.8%
        55%
        251 bp
        0.6
        UDP0290_S388_L001_R2_001
        94.2%
        54%
        251 bp
        0.6

        FastQC

        FastQC is a quality control tool for high throughput sequence data, written by Simon Andrews at the Babraham Institute in Cambridge.

        Sequence Counts

        Sequence counts for each sample. Duplicate read counts are an estimate only.

        This plot show the total number of reads, broken down into unique and duplicate if possible (only more recent versions of FastQC give duplicate info).

        You can read more about duplicate calculation in the FastQC documentation. A small part has been copied here for convenience:

        Only sequences which first appear in the first 100,000 sequences in each file are analysed. This should be enough to get a good impression for the duplication levels in the whole file. Each sequence is tracked to the end of the file to give a representative count of the overall duplication level.

        The duplication detection requires an exact sequence match over the whole length of the sequence. Any reads over 75bp in length are truncated to 50bp for this analysis.

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        Sequence Quality Histograms

        The mean quality value across each base position in the read.

        To enable multiple samples to be plotted on the same graph, only the mean quality scores are plotted (unlike the box plots seen in FastQC reports).

        Taken from the FastQC help:

        The y-axis on the graph shows the quality scores. The higher the score, the better the base call. The background of the graph divides the y axis into very good quality calls (green), calls of reasonable quality (orange), and calls of poor quality (red). The quality of calls on most platforms will degrade as the run progresses, so it is common to see base calls falling into the orange area towards the end of a read.

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        Per Sequence Quality Scores

        The number of reads with average quality scores. Shows if a subset of reads has poor quality.

        From the FastQC help:

        The per sequence quality score report allows you to see if a subset of your sequences have universally low quality values. It is often the case that a subset of sequences will have universally poor quality, however these should represent only a small percentage of the total sequences.

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        Per Base Sequence Content

        The proportion of each base position for which each of the four normal DNA bases has been called.

        To enable multiple samples to be shown in a single plot, the base composition data is shown as a heatmap. The colours represent the balance between the four bases: an even distribution should give an even muddy brown colour. Hover over the plot to see the percentage of the four bases under the cursor.

        To see the data as a line plot, as in the original FastQC graph, click on a sample track.

        From the FastQC help:

        Per Base Sequence Content plots out the proportion of each base position in a file for which each of the four normal DNA bases has been called.

        In a random library you would expect that there would be little to no difference between the different bases of a sequence run, so the lines in this plot should run parallel with each other. The relative amount of each base should reflect the overall amount of these bases in your genome, but in any case they should not be hugely imbalanced from each other.

        It's worth noting that some types of library will always produce biased sequence composition, normally at the start of the read. Libraries produced by priming using random hexamers (including nearly all RNA-Seq libraries) and those which were fragmented using transposases inherit an intrinsic bias in the positions at which reads start. This bias does not concern an absolute sequence, but instead provides enrichement of a number of different K-mers at the 5' end of the reads. Whilst this is a true technical bias, it isn't something which can be corrected by trimming and in most cases doesn't seem to adversely affect the downstream analysis.

        Click a sample row to see a line plot for that dataset.
        Rollover for sample name
        Position: -
        %T: -
        %C: -
        %A: -
        %G: -

        Per Sequence GC Content

        The average GC content of reads. Normal random library typically have a roughly normal distribution of GC content.

        From the FastQC help:

        This module measures the GC content across the whole length of each sequence in a file and compares it to a modelled normal distribution of GC content.

        In a normal random library you would expect to see a roughly normal distribution of GC content where the central peak corresponds to the overall GC content of the underlying genome. Since we don't know the the GC content of the genome the modal GC content is calculated from the observed data and used to build a reference distribution.

        An unusually shaped distribution could indicate a contaminated library or some other kinds of biased subset. A normal distribution which is shifted indicates some systematic bias which is independent of base position. If there is a systematic bias which creates a shifted normal distribution then this won't be flagged as an error by the module since it doesn't know what your genome's GC content should be.

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        Per Base N Content

        The percentage of base calls at each position for which an N was called.

        From the FastQC help:

        If a sequencer is unable to make a base call with sufficient confidence then it will normally substitute an N rather than a conventional base call. This graph shows the percentage of base calls at each position for which an N was called.

        It's not unusual to see a very low proportion of Ns appearing in a sequence, especially nearer the end of a sequence. However, if this proportion rises above a few percent it suggests that the analysis pipeline was unable to interpret the data well enough to make valid base calls.

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        Sequence Length Distribution

        The distribution of fragment sizes (read lengths) found. See the FastQC help

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        Sequence Duplication Levels

        The relative level of duplication found for every sequence.

        From the FastQC Help:

        In a diverse library most sequences will occur only once in the final set. A low level of duplication may indicate a very high level of coverage of the target sequence, but a high level of duplication is more likely to indicate some kind of enrichment bias (eg PCR over amplification). This graph shows the degree of duplication for every sequence in a library: the relative number of sequences with different degrees of duplication.

        Only sequences which first appear in the first 100,000 sequences in each file are analysed. This should be enough to get a good impression for the duplication levels in the whole file. Each sequence is tracked to the end of the file to give a representative count of the overall duplication level.

        The duplication detection requires an exact sequence match over the whole length of the sequence. Any reads over 75bp in length are truncated to 50bp for this analysis.

        In a properly diverse library most sequences should fall into the far left of the plot in both the red and blue lines. A general level of enrichment, indicating broad oversequencing in the library will tend to flatten the lines, lowering the low end and generally raising other categories. More specific enrichments of subsets, or the presence of low complexity contaminants will tend to produce spikes towards the right of the plot.

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        Overrepresented sequences

        The total amount of overrepresented sequences found in each library.

        FastQC calculates and lists overrepresented sequences in FastQ files. It would not be possible to show this for all samples in a MultiQC report, so instead this plot shows the number of sequences categorized as over represented.

        Sometimes, a single sequence may account for a large number of reads in a dataset. To show this, the bars are split into two: the first shows the overrepresented reads that come from the single most common sequence. The second shows the total count from all remaining overrepresented sequences.

        From the FastQC Help:

        A normal high-throughput library will contain a diverse set of sequences, with no individual sequence making up a tiny fraction of the whole. Finding that a single sequence is very overrepresented in the set either means that it is highly biologically significant, or indicates that the library is contaminated, or not as diverse as you expected.

        FastQC lists all of the sequences which make up more than 0.1% of the total. To conserve memory only sequences which appear in the first 100,000 sequences are tracked to the end of the file. It is therefore possible that a sequence which is overrepresented but doesn't appear at the start of the file for some reason could be missed by this module.

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        Adapter Content

        The cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position.

        Note that only samples with ≥ 0.1% adapter contamination are shown.

        There may be several lines per sample, as one is shown for each adapter detected in the file.

        From the FastQC Help:

        The plot shows a cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position. Once a sequence has been seen in a read it is counted as being present right through to the end of the read so the percentages you see will only increase as the read length goes on.

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        Status Checks

        Status for each FastQC section showing whether results seem entirely normal (green), slightly abnormal (orange) or very unusual (red).

        FastQC assigns a status for each section of the report. These give a quick evaluation of whether the results of the analysis seem entirely normal (green), slightly abnormal (orange) or very unusual (red).

        It is important to stress that although the analysis results appear to give a pass/fail result, these evaluations must be taken in the context of what you expect from your library. A 'normal' sample as far as FastQC is concerned is random and diverse. Some experiments may be expected to produce libraries which are biased in particular ways. You should treat the summary evaluations therefore as pointers to where you should concentrate your attention and understand why your library may not look random and diverse.

        Specific guidance on how to interpret the output of each module can be found in the relevant report section, or in the FastQC help.

        In this heatmap, we summarise all of these into a single heatmap for a quick overview. Note that not all FastQC sections have plots in MultiQC reports, but all status checks are shown in this heatmap.

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